Publications

Publications 2020

Papers including work performed in the frame of iGE3

Alphabetical order of first authors’ names

  • Alfaiate D, Clément S, Gomes D, Goossens N, Negro F. Chronic hepatitis D and hepatocellular carcinoma: A systematic review and meta-analysis of observational studies. J Hepatol. 2020 Mar 6:S0168-8278(20)30129-X. ► Pubmed
  • Al-Yafei Z, Goeury T, Alvares M, Al Seiari M, Sanchez-Mazas A, Elghazali G. United Arab Emirates: Unusual departure from neutrality towards excess of homozygotes at the HLA-B locus. HLA. 2020 May;95(5):470-473. ► Pubmed
  • Ansar M, Ebstein F, Özkoç H, Paracha SA, Iwaszkiewicz J, Gesemann M, Zoete V, Ranza E, Santoni FA, Sarwar MT, Ahmed J, Krüger E, Bachmann-Gagescu R, Antonarakis SE. Biallelic variants in PSMB1 encoding the proteasome subunit β6 cause impairment of proteasome function, microcephaly, intellectual disability, developmental delay and short stature. Hum Mol Genet. 2020 May 8;29(7):1132-1143. ► Pubmed
  • Ansar M, Ranza E, Shetty M, Paracha SA, Azam M, Kern I, Iwaszkiewicz J, Farooq O, Pournaras CJ, Malcles A, Kecik M, Rivolta C, Muzaffar W, Qurban A, Ali L, Aggoun Y, Santoni FA, Makrythanasis P, Ahmed J, Qamar R, Sarwar MT, Henry LK, Antonarakis SE. Taurine treatment of retinal degeneration and cardiomyopathy in a consanguineous family with SLC6A6 taurine transporter deficiency. Hum Mol Genet. 2020 Mar 13;29(4):618-623. ► Pubmed
  • Ardissone S, Kint N, Petrignani B, Panis G, Viollier PH. Secretion relieves translational co-repression by a specialized flagellin paralog. Dev Cell. 2020 Nov 23;55(4):500-513.e4. ► Pubmed
  • Ardissone S, Kint N, Viollier PH. Specificity in glycosylation of multiple flagellins by the modular and cell cycle regulated glycosyltransferase FlmG. Elife. 2020 Oct 27;9:e60488. ► Pubmed
  • Badaoui M, Zoso A, Idris T, Bacchetta M, Simonin J, Lemeille S, Wehrle-Haller B, Chanson M. Vav3 mediates Pseudomonas aeruginosa adhesion to the cystic fibrosis airway epithelium. Cell Rep. 2020 Jul 7;32(1):107842. ► Pubmed
  • Barquera R, Collen E, Buhler S, Teixeira J, Llamas B, Nunes JM, Sanchez-Mazas A. Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in populations worldwide. HLA. 2020 Sep;96(3):277-298. ► Pubmed
  • Bernal C, Silvano M, Tapponnier Y, Anand S, Angulo C, Ruiz I Altaba A. Functional pro-metastatic heterogeneity revealed by Spiked-scRNAseq is shaped by cancer cell interactions and restricted by VSIG1. Cell Rep. 2020 Nov 10;33(6):108372. ► Pubmed
  • Boillat M, Hammoudi PM, Dogga SK, Pagès S, Goubran M, Rodriguez I, Soldati-Favre D. Neuroinflammation-associated aspecific manipulation of mouse predator fear by Toxoplasma gondii. Cell Rep. 2020 Jan 14;30(2):320-334.e6. ► Pubmed
  • Branco C, Ray N, Currat M, Arenas M. Influence of Paleolithic range contraction, admixture and long-distance dispersal on genetic gradients of modern humans in Asia. Mol Ecol. 2020 Jun;29(12):2150-2159. ► Pubmed
  • Buzgariu W, Curchod ML, Perruchoud C, Galliot B. Combining BrdU-labeling to detection of neuronal markers to monitor adult neurogenesis in Hydra. Methods Mol Biol. 2020;2047:3-24. ► Pubmed
  • Chevalier C, Kieser S, Çolakoğlu M, Hadadi N, Brun J, Rigo D, Suárez-Zamorano N, Spiljar M, Fabbiano S, Busse B, Ivanišević J, Macpherson A, Bonnet N, Trajkovski M. Warmth prevents bone loss through the gut microbiota. Cell Metab. 2020 Oct 6;32(4):575-590.e7. ► Pubmed
  • Çolakoğlu M, Xue J, Trajkovski M. Bacteriophage prevents alcoholic liver disease. Cell 2020 Jan 23;180(2):218-220. ► Pubmed
  • Demonsais L, Utz-Pugin A, Loubéry S, Lopez-Molina L. Identification of tannic cell walls at the outer surface of the endosperm upon Arabidopsis seed coat rupture. Plant J. 2020 Nov;104(3):567-580. ► Pubmed
  • Dibner C. The importance of being rhythmic: Living in harmony with your body clocks. Acta Physiol (Oxf). 2020 Jan;228(1):e13281. ► Pubmed
  • Finger AM, Dibner C, Kramer A. Coupled network of the circadian clocks: a driving force of rhythmic physiology. FEBS Lett. 2020 Sep;594(17):2734-2769. ► Pubmed
  • Gill JK, Maffioletti A, García-Molinero V, Stutz F, Soudet J. Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription. Cell Rep. 2020 May 5;31(5):107612. ► Pubmed
  • Infantino V, Stutz F. The functional complexity of the RNA-binding protein Yra1: mRNA biogenesis, genome stability and DSB repair. Curr Genet. 2020 Feb;66(1):63-71. ► Pubmed
  • Khemici V, Prados J, Petrignani B, Di Nolfi B, Bergé E, Manzano C, Giraud C, Linder P. The DEAD-box RNA helicase CshA is required for fatty acid homeostasis in Staphylococcus aureus. PLoS Genet. 2020 Jul 30;16(7):e1008779. ► Pubmed
  • Kieser S, Brown J, Zdobnov EM, Trajkovski M, McCue LA. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data. BMC Bioinformatics. 2020 Jun 22;21(1):257. ► Pubmed
  • Kloehn J, Oppenheim RD, Siddiqui G, De Bock PJ, Kumar Dogga S, Coute Y, Hakimi MA, Creek DJ, Soldati-Favre D. Multi-omics analysis delineates the distinct functions of sub-cellular acetyl-CoA pools in Toxoplasma gondii. BMC Biol. 2020 Jun 16;18(1):67. ► Pubmed
  • Kryuchkov M, Bilousov O, Lehmann J, Fiebig M, Katanaev VL. Reverse and forward engineering of Drosophila corneal nanocoatings. Nature. 2020 Sep;585(7825):383-389. ► Pubmed
  • Le Guennec M, Klena N, Gambarotto D, Laporte MH, Tassin AM, van den Hoek H, Erdmann PS, Schaffer M, Kovacik L, Borgers S, Goldie KN, Stahlberg H, Bornens M, Azimzadeh J, Engel BD, Hamel V, Guichard P. A helical inner scaffold provides a structural basis for centriole cohesion. Sci Adv. 2020 Feb 14;6(7):eaaz4137. ► Pubmed
  • Mancini V, Sandini C, Padula MC, Zöller D, Schneider M, Schaer M, Eliez S. Positive psychotic symptoms are associated with divergent developmental trajectories of hippocampal volume during late adolescence in patients with 22q11DS. Mol Psychiatry. 2020 Nov;25(11):2844-2859. ► Pubmed
  • Mancini V, Zöller D, Schneider M, Schaer M, Eliez S. Abnormal development and dysconnectivity of distinct thalamic nuclei in patients with 22q11.2 deletion syndrome experiencing auditory hallucinations. Biol Psychiatry Cogn Neurosci Neuroimaging. 2020 Sep;5(9):875-890. ► Pubmed
  • Mivelaz M, Cao AM, Kubik S, Zencir S, Hovius R, Boichenko I, Stachowicz AM, Kurat CF, Shore D, Fierz B. Chromatin fiber invasion and nucleosome displacement by the Rap1 transcription factor. Mol Cell. 2020 Feb 6;77(3):488-500.e9. ► Pubmed
  • Molinard-Chenu A, Fluss J, Laurent S, Laurent M, Guipponi M, Dayer AG. MCF2 is linked to a complex perisylvian syndrome and affects cortical lamination. Ann Clin Transl Neurol. 2020 Jan;7(1):121-125. ► Pubmed
  • Ntasis VF, Panousis NI, Tektonidou MG, Dermitzakis ET, Boumpas DT, Bertsias GK, Nikolaou C. Extensive fragmentation and re-organization of transcription in Systemic Lupus Erythematosus. Sci Rep. 2020 Oct 6;10(1):16648. ► Pubmed
  • Pahlavanneshan S, Behmanesh M, Oropeza D, Furuyama K, Tahamtani Y, Basiri M, Herrera PL, Baharvand H. Combined inhibition of menin-MLL interaction and TGF-β signaling induces replication of human pancreatic beta cells. Eur J Cell Biol. 2020 Jun;99(5):151094. ► Pubmed
  • Pandey RR, Delfino E, Homolka D, Roithova A, Chen KM, Li L, Franco G, Vågbø CB, Taillebourg E, Fauvarque MO, Pillai RS. The mammalian cap-specific m6Am RNA methyltransferase PCIF1 regulates transcript levels in mouse tissues. Cell Rep. 2020 Aug 18;32(7):108038. ► Pubmed
  • Petrenko V, Gandasi NR, Sage D, Tengholm A, Barg S, Dibner C. In pancreatic islets from type 2 diabetes patients, the dampened circadian oscillators lead to reduced insulin and glucagon exocytosis. Proc Natl Acad Sci U S A. 2020 Feb 4;117(5):2484-2495. ► Pubmed
  • Petrenko V, Stolovich-Rain M, Vandereycken B, Giovannoni L, Storch KF, Dor Y, Chera S, Dibner C. The core clock transcription factor BMAL1 drives circadian β-cell proliferation during compensatory regeneration of the endocrine pancreas. Genes Dev. 2020 Dec 1;34(23-24):1650-1665. ► Pubmed
  • Quilodrán CS, Montoya-Burgos JI, Currat M. Harmonizing hybridization dissonance in conservation. Commun Biol. 2020 Jul 21;3(1):391. ► Pubmed
  • Quilodrán CS, Nussberger B, Macdonald DW, Montoya-Burgos JI, Currat M. Projecting introgression from domestic cats into European wildcats in the Swiss Jura. Evol Appl. 2020 May 5;13(8):2101-2112. ► Pubmed
  • Quilodrán CS, Tsoupas A, Currat M. The spatial signature of introgression after a biological invasion with hybridization. Front Ecol Evol. 2020 Sep 29;8:569620. ► Journal
  • Ramadori G, Ioris RM, Villanyi Z, Firnkes R, Panasenko OO, Allen G, Konstantinidou G, Aras E, Brenachot X, Biscotti T, Charollais A, Luchetti M, Bezrukov F, Santinelli A, Samad M, Baldi P, Collart MA, Coppari R. FKBP10 regulates protein translation to sustain lung cancer growth. Cell Rep. 2020 Mar 17;30(11):3851-3863.e6. ► Pubmed
  • Rollason V, Mouterde M, Daali Y, Čížková M, Priehodová E, Kulichová I, Posová H, Petanová J, Mulugeta A, Makonnen E, Al-Habsi A, Davidson R, Al-Balushi KK, Al-Thihli K, Cerná M, Al-Yahyaee S, Černý V, Yimer G, Poloni ES, Desmeules J. Safety of the Geneva cocktail, a cytochrome P450 and P-glycoprotein phenotyping cocktail, in healthy volunteers from three different geographic origins. Drug Saf. 2020 Nov;43(11):1181-1189. ► Pubmed
  • Rouaud F, Tessaro F, Aimaretti L, Scapozza L, Citi S. Cooperative binding of the tandem WW domains of PLEKHA7 to PDZD11 promotes conformation-dependent interaction with tetraspanin 33. J Biol Chem. 2020 Jul 10;295(28):9299-9312. ► Pubmed
  • Ruiz Buendía GA, Leleu M, Marzetta F, Vanzan L, Tan JY, Ythier V, Randall EL, Marques AC, Baubec T, Murr R, Xenarios I, Dion V. Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion. Sci Adv. 2020 Jul 3;6(27):eaaz4012. ► Pubmed
  • Schenkelaars Q, Perez-Cortes D, Perruchoud C, Galliot B. The polymorphism of Hydra microsatellite sequences provides strain-specific signatures. PLoS One. 2020 Sep 28;15(9):e0230547. ► Pubmed
  • Serbyn N, Noireterre A, Bagdiul I, Plank M, Michel AH, Loewith R, Kornmann B, Stutz F. The aspartic protease Ddi1 contributes to DNA-protein crosslink repair in yeast. Mol Cell. 2020 Mar 5;77(5):1066-1079.e9. ► Pubmed
  • Shyian M, Albert B, Zupan AM, Ivanitsa V, Charbonnet G, Dilg D, Shore D. Fork pausing complex engages topoisomerases at the replisome. Genes Dev. 2020 Jan 1;34(1-2):87-98. ► Pubmed
  • Sinturel F, Petrenko V, Dibner C. Circadian clocks make metabolism run. J Mol Biol. 2020 May 29;432(12):3680-3699. ► Pubmed
  • Tavridou E, Pireyre M, Ulm R. Degradation of the transcription factors PIF4 and PIF5 under UV-B promotes UVR8-mediated inhibition of hypocotyl growth in Arabidopsis. Plant J. 2020 Feb;101(3):507-517. ► Pubmed
  • Tavridou E, Schmid-Siegert E, Fankhauser C, Ulm R. UVR8-mediated inhibition of shade avoidance involves HFR1 stabilization in Arabidopsis. PLoS Genet. 2020 May 11;16(5):e1008797. ► Pubmed
  • Tissot N, Ulm R. Cryptochrome-mediated blue-light signalling modulates UVR8 photoreceptor activity and contributes to UV-B tolerance in Arabidopsis. Nat Commun. 2020 Mar 12;11(1):1323. ► Pubmed
  • Tomczyk S, Suknovic N, Schenkelaars Q, Wenger Y, Ekundayo K, Buzgariu W, Bauer C, Fischer K, Austad S, Galliot B. Deficient autophagy in epithelial stem cells drives aging in the freshwater cnidarian Hydra. Development. 2020 Jan 23;147(2). pii: dev177840. ► Pubmed
  • Ullate-Agote A, Burgelin I, Debry A, Langrez C, Montange F, Peraldi R, Daraspe J, Kaessmann H, Milinkovitch MC, Tzika AC. Genome mapping of a LYST mutation in corn snakes indicates that vertebrate chromatophore vesicles are lysosome-related organelles. Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26307-26317. ► Pubmed
  • Vangenot C, Nunes JM, Doxiadis GM, Poloni ES, Bontrop RE, de Groot NG, Sanchez-Mazas A. Similar patterns of genetic diversity and linkage disequilibrium in Western chimpanzees (Pan troglodytes verus) and humans indicate highly conserved mechanisms of MHC molecular evolution. BMC Evol Biol. 2020 Sep 15;20(1):119. ► Pubmed
  • Vilar R, Casini A, Fournel A, Mourey G, Neerman-Arbez M. Identification and expression of a novel heterozygous frameshift mutation in FGA accounting for congenital hypofibrinogenemia in carriers of severe hemophilia A. Thromb Res. 2020 Sep;193:5-8. ► Pubmed
  • Vilar R, Fish RJ, Casini A, Neerman-Arbez M. Fibrin(ogen) in human disease: both friend and foe. Haematologica. 2020 Jan 31;105(2):284-296. ► Pubmed
  • Zencir S, Dilg D, Rueda MP, Shore D, Albert B. Mechanisms coordinating ribosomal protein gene transcription in response to stress. Nucleic Acids Res. 2020 Nov 18;48(20):11408-11420. ► Pubmed

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